The quest stage details below are listed in case you get stuck on a quest and want to use a console command to advance it. 

For all repeatable quests and the Reformed Institute side quests, if you have an issue or simply don't feel like doing the quest anymore and want to reset it, you can ask the quest provider (person or terminal) to stop the quest, and you won't need a console command.

If you decide to use a console command, the "xx" below in the quest ID's should be replaced by the order of the mod in your load order (e.g. replace xx with 34 if the mod is 34th in your load order).  To find the full quest ID, use console command: help <editor id of quest you want to find> 4.

To advance a quest stage, use console command: setstage questid stage#, e.g. setstage 01234567 20.

Advancing a quest with a console command is a last resort if nothing else works. Watching one of the play-through videos below to find a hint should be attempted before using console commands.

If you're stuck on a quest not listed below, check the Outcasts and Remnants quest details page or the Fusion City Rising quest details page.

Main Quests

1) In A Darkened Room: Quest ID xx009926, Editor ID: PV_FindValkyrie, Stages:

10 Investigate Cabot House.
20 Gain access to Parsons Insane Asylum and find Valkyrie.
30 Access the terminal to unlock Valkyrie's cell door.
40 Talk to Valkyrie.
50 Help Valkyrie escape the asylum.
60 Speak with Valkyrie.

Help Valkyrie escape Parsons Insane Asylum. Auto-starts after installing the mod, or head to Cabot House and read the desk terminal on second floor. Play-through video here.

2) Malpractice: Quest ID: xx01A461, Editor ID: PV_ValkyrieMedicalQuest, Stages:

10 Ask Valkyrie if she needs help with anything.
20 Explore Medford Memorial Hospital for clues about Valkyrie's abduction.
30 Investigate Kendall Hospital in Cambridge for details on the DNA profile.
40 Search Mass Bay Medical for specifics on the abduction plan.
50 Talk to Valkyrie about what you found.

Investigate local hospitals to help Valkyrie figure out why she was abducted. Play-through video here.

3) Heir to the Throne: Quest ID: xx01D25D, Editor ID: PV_ValkyrieMilitaryQuest, Stages:

10 Talk to Valkyrie.
20 Visit Valkyrie's old apartment and help her find her gear.
30 Give Valkyrie her gear.
40 Search the apartment for any notes from Vanessa.
50 Read the 'Note from Vanessa'.
60 Talk to Valkyrie.
70 Explore USAF Satellite Station for clues as to Vanessa's fate.
80 Chat with Valkyrie about the next steps.

Explore Valkyrie's military past and obtain a new player home. Play-through video here.

4) Wag the Dog: Quest ID: xx098098, Editor ID: OAR_PrydwenQuest, Stages:

10 Talk to Fiona McBride at the B.O.G Bunker about the Liberty Prime Codes.
20 Talk to Owen.
30 Escort Owen to the safe house to visit his mom.
40 Talk to Owen's mom.
50 Investigate the disturbance.
60 Talk to Sarah.
70 Gather any supplies you need and search for intel on Sarah.
80 Talk to Sarah.
90 Search the nearby town for Brotherhood hostiles.
100 Kill the squad leader and search for any intel.
110 Read the "Orders from Kells".
120 Make sure all the enemies are dead, then talk to Sarah.
130 Warn Chase about the Brotherhood ambush.
140 Talk to Sarah.
150 Look for a secret room and grab any intel there.
160 Talk to Sarah.
165 Access the Prydwen Command Deck.
170 Follow Sarah until she reaches Maxson, then talk to Maxson.
180 Talk to Sarah (violent).
190 Talk to Sarah (peaceful).
200 Follow Sarah until she finds Kells, then confront Captain Kells with her.
220 Follow Sarah until she finds Quinlan, then confront Proctor Quinlan with her.
240 Talk to Sarah.
260 Check back in with Fiona.
270 Talk to Sarah

Meet three new companions and take over the Brotherhood of Steel. Play-through video here.

5) The Revolution Will not be Televised: Quest ID: xx0DCFAE, Editor ID: OAR_InstituteQuest, Stages:

10 Talk to Sarah.
15 Head to Club Snuggle.
20 Talk to Carter Beckett.
30 Retrieve the Teleport Gun components from Jimbo's Tower.
40 Retrieve the Teleport Gun components from the Now Leasing Tower.
50 Return the Teleport Gun components to Carter.
60 Talk to Dr. Zimmer.
70 Check back in with Carter.
80 Head to Dr. Ayo's quarters in the Institute.
90 Load Zimmer's Holotape onto Ayo's Terminal to initiate the security shutdown.
100 Equip your Teleportation Gun and talk to Clayton Holdren (before you shoot him).
110 Kill Holdren or banish him with the Teleportation Gun, then confront Isaac Karlin.
120 Kill Karlin or banish him with the Teleportation Gun, then confront Alana Secord.
130 Kill or banish Alana Secord, banish anyone else you want, then talk to Allie Filmore.
140 Report your success to Carter Beckett.
150 Talk to Sawyer.
160 Check in with Sarah.
170 Convince Desdemona to stand down, or kill her.
180 Report back to Sarah.
190 Convince Preston to stand down, or teleport him to prison.
200 Check back with Sawyer.
250 Access the Reformed Institute and talk to Carter.
260 Visit your new Director's quarters.

Help Dr. Carter Beckett overthrow the Institute's management. Play-through video here.

Brotherhood of Steel Side Quests

Break The Wheel: Quest ID: xx1381B7, Editor ID: OAR_BreakTheWheel, Stages:

10 Investigate the Cambridge Police Station for signs of dissenters.
20 Access the information on Knight Rhys' Holotape
30 Read Scribe Haylen's terminal behind the first floor lobby desk, then talk to Haylen.
40 Access the Sentinel Site in the Glowing Sea and eliminate any resistance.
50 Secure the area.
60 Confront Rhys.
70 Retrieve the nuclear launch codes.
80 Use the "Radio B.O.G. Holotape" to call the B.O.G. for backup.
100 Talk to Scribe Haylen.
200 Report back to Sarah.
250 Invite Scribe Haylen to join Lyons' Pride.

Help Sarah fight off the Brotherhood resistance to her becoming Elder. Get your revenge on Rhys, and take Scribe Haylen as a companion. Play-through video here.

Peace Through Superior Firepower: Quest ID: xx0A4180, Editor ID: OAR_LibertyPrimeBattleQuest, Stages:

10 Visit Liberty Prime near the Boston Airport parking structure.
20 Recruit Liberty Prime and use him to help take back Quincy.
30 Eradicate the Gunner facists.
40 Spread democracy in West Roxbury.
50 Neutralize the Super Mutant commies.
60 Initiate a preemptive strike on the hostiles in South Boston.
70 Destroy the enemies of Democracy.
80 Let freedom ring in Trinity Plaza.
90 Annihilate the communist sympathizers.
100 Liberate Salem.
110 Depopulate the area.

Help Liberty Prime spread murder and democracy throughout the Commonwealth. The quest auto-starts at end of Wag the Dog. Play-through video here.

Reformed Institute Side Quests

If you have any trouble with the quests below, just ask the quest giver (NPC or terminal) to cancel the quest.

Igor, Fetch me the brain! (Deathclaw terminal in main Bioscience)
Cold as Ice (Facilities terminal in back part of Bioscience)
Dirty Laundry (Facilities terminal in back part of Bioscience)
It's not a Party without Patrons (Wall terminal in Club S.R.B overlooking the pool)
Adventures in Voyeurism (Desk terminal in Rosalind Orman's apartment)
Institute Tech Retrieval (ask Evan Watson for work, he's usually in Advanced Systems)
Feral Ghoul Extermination (ask Alan Binet for work, he's usually in Robotics)
Super Mutant Extermination (ask Nathan Filmore for work, he's usually in Advanced Systems)

Random Side Quests

Lost in Transit: Quest ID: xx0245E0, Editor ID: PV_ValkyrieShipment, Stages:

10 Search the NH&M Freight Depot for the personal effects mentioned in Vanessa's shipping receipt.
20 Read the 'Letter from Vanessa'.
30 Talk to Valkyrie and give her the letter from Vanessa.

Start the quest by looting the note off Vanessa's corpse in the intel room of USAF Satellite Station. Play-through video to start the quest here.

There are no quest markers. The NH&M Freight Depot building is located southeast of Diamond City other side of freeway. To obtain access to the building, complete the vanilla quest "The Big Dig" with Bobbi in Goodneighor. Play-through video of accessing the building is here.

Owen Repeatable Side Quests

Ask Owen for work to get the quest (or sometimes to turn in the quest). If you have any trouble with the quest and want to cancel, there will be an option to do so under the "Got Any Work" menu option. All these quests are repeatable to new locations.

Partnership for a Drug-Free Commonwealth
Scavenger Hunt & Collect 'em All
Exploring New Places with Owen

Valkyrie Repeatable Side Quests

Once you've completed "Heir to the Throne", Valkyrie can give you side quests. Ask her for work to get the quest (or sometimes to turn in the quest). If you have any trouble with the quest and want to cancel, there will be an option to do so under the "Got Any Work" menu option. All these quests are repeatable to new locations.

Bounty Hunting with Valkyrie
Loot Recovery for Valkyrie
Exploring New Places with Valkyrie

Sarah Repeatable Side Quests

Ask Sarah for work to get the quest (or sometimes to turn in the quest). If you have any trouble with the quest and want to cancel, there will be an option to do so under the "Got Any Work" menu option. All these quests are repeatable to new locations.

Bounty Hunting with Sarah
Tech Retrieval for Sarah
Exploring New Places with Sarah