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I have found a way to use a Xbox Gamepad for Morrowind on many blogs. It is not the same as on Xbox. To activate things in menus press RT. And you will only get 3-4 quick keys (Depending on your controller mapping). The Morrowind (Better Blocking & Better Running) controls is set up more like the Skyrim controls on Xbox 360. The Morrowind (Better Blocking) controls is set up more like the Oblivion controls on Xbox 360 and the Morrowind controls is set up more like Morrowind in the Xbox/Xbox 360.

And if you play Oblivion also look at my Oblivion Xbox Gamepad

Morrowind

A-Activate-Spacebar
B-Menu-Right Click
X-Ready Weapon-F
Y-Ready Magic-R
RB-Rest-T
LB-Journal-J
RT-Use-Left Click
LT-Jump-E
Start-Pause-Esc
Back-Quick Key Menu-F1
D-Pad-Quick Keys-1, 2, 3, 4
Left Joystick-Sneak-Ctrl
Right Joystick-Toggle POV-Tab


Morrowind (Better Blocking)

A-Activate-Spacebar
B-Menu-Right Click
X-Ready Weapon-F
Y-Jump-E
RB-Ready Magic-R
LB-Journal-J
RT-Use-Left Click
LT-Block-C
Start-Pause-Esc
Back-Rest/Quick Key Menu (Hold)-T, F1
D-Pad-Quick keys-1, 2, 3, 4
Left Joystick-Sneak-Ctrl
Right Joystick-Toggle POV-Tab


Morrowind (Better Blocking & Better Running)

A-Activate-Spacebar
B-Menu-Right Click
X-Ready Weapon-F
Y-Jump-E
RB-Ready Magic-R
LB-Run-Left Shift
RT-Use-Left Click
LT-Block-C
Start-Pause-Esc
Back-Rest/Journal (Hold)-T, J
D-pad Up-Quick Key Menu-F1
D-Pad-Quick keys-1, 2, 3
Left Joystick-Sneak-Ctrl
Right Joystick-Toggle POV-Tab



If you are using the propeitary Morrowind engine (Not OpenMW) Then go into to the Morrowind.ini and S=scroll down until you find...

Joystick Look Up/Down=6
Joystick Look Left/Right=3

Change it to...

Joystick Look Up/Down=0
Joystick Look Left/Right=0

If you are using OpenMW you will need to launch OpenMW and go to the Options->Controls and set Enable Joystick to Off.

If your running Morrowind in Compatibility Mode you may need to run AntimicroX in compatibility mode also. Also if Morrowind is ran as an administrator you will most likely run AntimicroX as an administrator. To disable the Xbox 360 popup window when you press the Xbox Guide Button press the Windows Key + R and type msconfig. Then go to Startup and right click on XboxStat.exe and disable it.

To run the AntimicroX profile when the game launches make sure the auto profile is linked to the Morrowind.exe or the openmw.exe

You may need to Adjust the Vertical and Horizontal Sensitivity in Morrowind options.