I will look into it! I don't know about the stump, as there are many different trees, and only 1 stump. Maybe cut the tree and it reverts to sapling for that tree type.... I'll check it.
No it will not. I have tested it on v1.3 (b9) with Better Biomes installed. You may want to look in the Wild Crops biomes.xml and increase the spawn chance/frequency of the wild pumpkin, corn, potatoes, etc as the Better Biomes mod spawns a lot of its own models and can drastically reduce the wild crop plants spawn rate. But the vanilla RWG spawned plants will still revert to their planted seed version when hit or harvested regardless.
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https://www.nexusmods.com/7daystodie/mods/5366?