It should probably work as long as you make sure it's the active controller config and that the game is still launching through Steam, I currently use a Steam controller rather than a XB1 so I can't test personally. My old XB1 controller is long since defunct.
Sorry for the late reply, if you can't find it still you could always just copy the inputs to a new config in Steam and it should work the same, may have to adjust some joystick settings though.
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